MISA - MIcroSAtellite identification tool


Download MISA

Download misa.ini  - example of a specification file


Syntax: misa.pl <FASTAfile>
 

Declarations:
 


Output:

Results of the microsatellite search are stored in two files:

  1. In "<FASTfile>.misa" the localization and type of identified microsatellite(s) are stored in a tablewise manner.
  2. The file "<FASTfile>.statistics" summarizes different statistics as the frequency of a specific microsatellite type according to the unit size or individual motifs.



UPDATE:

27/09/2010: Small bug fix for the SSR frequency table in which motif groups are summarized