| file |
download |
description |
DLG d a t a f i l e s |
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| schema
graph |
gml, graphml |
Graph of all schema entities in selected life science databases. |
| data
linkage graphs (2.1GByte) |
gziped
csv file part1, part2 |
The
DLG's where stored in a flat relational structure: (graphid, node_depth, parent_entity,
parent_attribute, child_entity, child_attribute, parent_value,
child_value). Using appropriate tools, this file can
directly imported into relational databasese systems. !!! Because of file size limitations, the file was splited into two parts. So, please merge both before unzipping !!! |
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e x a m p l e n e t w o r k s |
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| Hordeum_Glycolysis |
gml, graphml, tgf | Queried networks comprising knowledge to enzymes in Hordeum vulgare (barley), which are active in glycolosis. For this DLGs where joined over enzymes (EC numbers) which are present in glycolysis and proteins which are reported in Hordeum vulgare. |
| Triticeae_Glycolysis | gml, graphml, tgf | Camparative query among "Hordeum_Glycolysis" and Triticeae (as taxonomic super class of barley). For this DLGs where joined over enzymes (EC numbers) which are present in glycolysis and proteins which are reported in Triticeae. |
| Solanaceae_Glycolysis |
gml, graphml, tgf | Queried networks comprising knowledge to enzymes in the family of Solanaceae (Nightshades), as a alternative taxonomic tree. For this DLGs where joined over enzymes (EC numbers) which are present in glycolysis and proteins which are reported in Solanaceae. |
| Triticeae_Glycolysis_Chloroplast |
gml, graphml, tgf | Comparative query of metabolic activity among compartments in the plant family Triticeae. For this DLGs where joined over enzymes (EC numbers) which are present in glycolysis, reported to be active in chloplasts and proteins which are reported in Triticeae. |
| Triticeae_Glycolysis_Cytoplasm |
gml, graphml, tgf | Comparative query of metabolic activity among compartments in the plant family Triticeae. For this DLGs where joined over enzymes (EC numbers) which are present in glycolysis, reported to be active in chloplasts and proteins which are reported in Triticeae. |
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s o f t w a r e |
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| DALIGRES |
DALIGRES | Software to map BLAST output to GeneOntology |